*Minutes* Jan 9 2018

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Notes from P2 Brain

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****** ABSTRACT ******

[[see word doc emailed as a separate file]]

****** Abstract figures ******

– No double line on figure

– Colorization

– Recolorize fn & sl relative to JW/JP subfi

****** JW updates ******

– For main Many schematics going across incl. DW’s network growth

– For abs. Use JP ex. With simplification

****** FN – RCA ******

– Flip graneen v yellow

– Ellipsiods a little faint

****** XS – single cell updates ******

– Brainspan single-cell?

– think about the cell types – collapse cell types + discuss w/ Jim

– add fetal, embryo to brainspan

– make the batch effect suppl. Figure which is diffe.

– determine optimal 100 biomarker, 10 biomarker genes to get the best R^2 [see board pic]

– what about the opc result for the gender disparities – ask Jim

– make a schematic for the 85%

– Cell type QTL – vs all variants like transQTL

****** MG’s suggestions for main text ******

– did we really detect brain-specific? Or brain-active?

– “mega” analysis — remove

– with respect to eTWAS: change if possible

– 1945 — put real number in text (for individuals)

– with respect to MG’s note “more” — elaborate and be sure to remain consistent across different tissues.

– “JW” — JW agrees with the “three-times” improvement remark

****** Quick updates/notes from meeting ******

– Fri website call Geetha

– SL – Fri. at noon or 1:30

– Jeff Lichtman

– SCREEN – reprocessing of roadmap brain samples

On Wed, Jan 10, 2018 at 8:32 PM, Shi, Xu <xu.shi> wrote:

abstract__brain_mtg_Jan_10.docx

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