TOTD publicizing a document using files.gersteinlab.org

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How to upload and make a public link for a file

STEP 1. Copy the document to iw.gersteinlab.org

Usage: ssh netid@iw.gersteinlab.org
cp from to

Note that files in gw.gersteinlab.org are also in iw.gersteinlab.org except for @gondor:/home/

STEP 2. Run the publicize.sh script

Usage: /usr/local/bin/publicize.sh FileName

STEP 3. You will get a link in the format:

http://files.gersteinlab.org/public-docs/YEAR/MONTH.DAY/FileName

Please note it can take up to a few minutes to sync.

Alternatively, files are also browsable from:

http://files.gersteinlab.org/s3/public-docs/

For more info: http://wiki.gersteinlab.org/labinfo/Public-docs

NAR Breakthrough Article: denovo-db: a compendium of human de novo variants

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.@denovodb: a compendium of [initially ~33K] human de novo variants w. phenotype, freely downloadable as a TSV table
https://academic.OUP.com/nar/article-lookup/doi/10.1093/nar/gkw865

QT:{{”
As of July 2016, denovo-db contained 40 different studies and 32,991 de novo variants from 23,098 trios. Database features include basic variant information (chromosome location, change, type); detailed annotation at the transcript and protein levels; severity scores; frequency; validation status; and, most importantly, the phenotype of the individual with the variant.
“}}

denovo-db.gs.washington.edu/denovo-db/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5210614/