Tag Archives: from

JClub by BW on “3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets”, Genome Medicine

3D clusters of somatic mutations…reveal numerous rare mutations as functional targets
https://GenomeMedicine.BiomedCentral.com/articles/10.1186/s13073-016-0393-x Introduces 3DHotSpots, which is one of a number of recent approaches (incl. CLUMPS, Hotspot3D, Mutation3D & HotMAPS) for finding groupings of somatic SNVs via structure

Highlights of 2017

*** UPDATED on 1/22/2018 ***

Mark’s 2017 Faculty Activity Report (FAR),
summarizing key lab "activities" of the past year.

* Here are dump directories with some excerpts:

http://files.gersteinlab.org/public-docs/2018/01.10/

These include:

* A full updated CV describing my lab’s activities (in too much detail):

http://files.gersteinlab.org/public-docs/2018/01.10/Full-CV-M-Gerstein–for-FAR-bld8Jan18-cv57.pdf

The CV is based on :

– Compiling the people in the lab, viz:

http://files.gersteinlab.org/public-docs/2018/01.10/cv57-22-bld8Jan18–AdaptedFrom–gerstein_lab_people_12_7_17.pdf

http://files.gersteinlab.org/public-docs/2018/01.10/cv57-23-bld27dec17–EditOn–Corrected-Past-Postdoctoral-Associates-and-Fellows.notrkchg.pdf

– A dump up to the end of ’17 of all of our scientific papers and our
"other writings" too.

http://files.gersteinlab.org/public-docs/2018/01.10/cv57-30-bld8Jan18–papers-simple-refmt.pdf

http://files.gersteinlab.org/public-docs/2018/01.10/cv57-26-bld8Jan18–addendum-Rest.JustOtherPubs.pdf

* There’s also an update on lectures in ’17:
http://lectures.gersteinlab.org/summary/

* Private "meetings" link, with authentication only for reference:
http://meetings.gersteinlab.org/2018/01.08/FAR-PDFs-to-post/
http://meetings.gersteinlab.org/2018/01.08/FAR-docs-to-post/

* For reference, this involved updating a variety of places on the wiki, viz:

http://info.gersteinlab.org/MBG-Profile
http://info.gersteinlab.org/Current_M_Gerstein_CV
http://info.gersteinlab.org/Additional_Information_about_Personnel
http://info.gersteinlab.org/Pubmed_query#Misc

* Finally, I’ve done little write up of some highlights, viz:
http://files.gersteinlab.org/public-docs/2018/01.22/GersteinLab-Research-Highlights-in-2017.pdf

Highlights of 2017

Gerstein Lab 2017 Faculty Activity Report (FAR), summarizing key lab "activities" of the past year.

* Here are dump directories with some excerpts:

http://files.gersteinlab.org/public-docs/2018/01.10/

These include:

* A full updated CV describing my lab’s activities (in too much detail):

http://files.gersteinlab.org/public-docs/2018/01.10/Full-CV-M-Gerstein–for-FAR-bld8Jan18-cv57.pdf

The CV is based on :

– Compiling the people in the lab, viz:

http://files.gersteinlab.org/public-docs/2018/01.10/cv57-22-bld8Jan18–AdaptedFrom–gerstein_lab_people_12_7_17.pdf

http://files.gersteinlab.org/public-docs/2018/01.10/cv57-23-bld27dec17–EditOn–Corrected-Past-Postdoctoral-Associates-and-Fellows.notrkchg.pdf

– A dump up to the end of ’17 of all of our scientific papers and our
"other writings" too.

http://files.gersteinlab.org/public-docs/2018/01.10/cv57-30-bld8Jan18–papers-simple-refmt.pdf

http://files.gersteinlab.org/public-docs/2018/01.10/cv57-26-bld8Jan18–addendum-Rest.JustOtherPubs.pdf

* There’s also an update on lectures in ’17:

http://lectures.gersteinlab.org/summary/

* Private links only for reference (authentication required):

http://meetings.gersteinlab.org/2018/01.08/FAR-PDFs-to-post/
http://meetings.gersteinlab.org/2018/01.08/FAR-docs-to-post/

* For reference, this involved updating a variety of places on the wiki, viz:

http://info.gersteinlab.org/MBG-Profile

http://info.gersteinlab.org/Current_M_Gerstein_CV
http://info.gersteinlab.org/Additional_Information_about_Personnel
http://info.gersteinlab.org/Pubmed_query#Misc

Batch Cloud Data Transfer Services – Amazon Snowball Appliance

Batch Cloud Data Transfer for @AWScloud
https://AWS.amazon.com/snowball & https://AWS.amazon.com/snowmobile Snail mail trumps email for really large data. Interesting to calculate effective transfer rates as compared “Ethernet.” Surprised that I couldn’t find even crude estimates.