https://youtu.be/7DbslbKsQSk
note taking to a whole different level
Tag Archives: from
1000 Genomes Samples sequenced deeply by Illumina, Inc
Here is the link to the new 150 deeply Illumina- sequenced 1000 Genomes samples…
https://www.ebi.ac.uk/ena/data/view/PRJEB20654
https://github.com/Illumina/Polaris/wiki/HiSeqX-Diversity-Panel
There is also a planned trio panel (51 trios) and a repeat expansion project.
IvyPlus Exchange Program + Imperial, UCL and U of London
a link to details on IvyPlus exchange program:
https://gsas.yale.edu/academics/exchanges/exchange-scholar-program-ivyplus-exchange
turns out Imperial College London is the institution that left U of London. UCL is still part of U of London
indeed: https://www.theguardian.com/education/2005/dec/09/highereducation.administration
Need to make a molecule? Ask this AI for instructions
Need to make a molecule? Ask this AI for instructions
http://www.nature.com/articles/d41586-018-03977-w #DeepLearning to do better #retrosynthesis. Perhaps other things in chemistry could be learned as well!
QT:{{”
“The tool, described in Nature on 28 March1, is not the first software to wield artificial intelligence (AI) instead of human skill and intuition. Yet chemists hail the development as a milestone, saying that it could speed up the process of drug discovery and make organic chemistry more efficient.
“What we have seen here is that this kind of artificial intelligence can capture this expert knowledge,” says Pablo Carbonell, who designs synthesis-predicting tools at the University of Manchester, UK, and was not involved in the work. He describes the effort as “a landmark paper”.”
“}}
New algorithm can create movies from just a few snippets of text | Science | AAAS
Interesting paper by alumnus Renqiang Min on “Video Generation from Text,” using a generative #MachineLearning model.
http://www.AAAI.org/GuideBook2018/16152-72279-GB.pdf (Press report by @SilverJacket: New algorithm can create movies from just a few snippets of text
http://www.ScienceMag.org/news/2018/02/new-algorithm-can-create-movies-just-few-snippets-text )
Video Generation from Text Yitong Li†∗, Martin Renqiang Min‡ , Dinghan Shen† , David Carlson† , Lawrence Carin† †
Nature 03142018 Single cell rnaseq of development of human brain Pfc
https://www.nature.com/articles/nature25980
A single-cell RNA-seq survey of the developmental landscape of the human prefrontal cortex
Suijuan Zhong
, Shu Zhang
[…]
Xiaoqun Wang
Nature
doi:10.1038/nature25980
Emperor Akihito’s publications
http://www.in.emb-japan.go.jp/PDF/(15)Some%20of%20the%20Publications%20by%20H.M.Emperor%20Akihito.pdf Some of the Publications by His Majesty Emperor Akihito
http://www.in.emb-japan.go.jp
Some of the Publications by His Majesty Emperor Akihito The Emperor, then Crown Prince Akihito, co-authored the entry on gobiid fishes in the The Fishes of the
ncdriver and ENCODE
Received: 13 November 2017 Revised: 22 November 2017 Accepted: 29 November 2017 https://www.nature.com/articles/s41525-017-0040-5.pdf
JClub by BW on “3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets”, Genome Medicine
3D clusters of somatic mutations…reveal numerous rare mutations as functional targets
https://GenomeMedicine.BiomedCentral.com/articles/10.1186/s13073-016-0393-x Introduces 3DHotSpots, which is one of a number of recent approaches (incl. CLUMPS, Hotspot3D, Mutation3D & HotMAPS) for finding groupings of somatic SNVs via structure
Highlights of 2017
*** UPDATED on 1/22/2018 ***
Mark’s 2017 Faculty Activity Report (FAR),
summarizing key lab "activities" of the past year.
* Here are dump directories with some excerpts:
http://files.gersteinlab.org/public-docs/2018/01.10/
These include:
* A full updated CV describing my lab’s activities (in too much detail):
http://files.gersteinlab.org/public-docs/2018/01.10/Full-CV-M-Gerstein–for-FAR-bld8Jan18-cv57.pdf
The CV is based on :
– Compiling the people in the lab, viz:
– A dump up to the end of ’17 of all of our scientific papers and our
"other writings" too.
http://files.gersteinlab.org/public-docs/2018/01.10/cv57-30-bld8Jan18–papers-simple-refmt.pdf
* There’s also an update on lectures in ’17:
http://lectures.gersteinlab.org/summary/
* Private "meetings" link, with authentication only for reference:
http://meetings.gersteinlab.org/2018/01.08/FAR-PDFs-to-post/
http://meetings.gersteinlab.org/2018/01.08/FAR-docs-to-post/
* For reference, this involved updating a variety of places on the wiki, viz:
http://info.gersteinlab.org/MBG-Profile
http://info.gersteinlab.org/Current_M_Gerstein_CV
http://info.gersteinlab.org/Additional_Information_about_Personnel
http://info.gersteinlab.org/Pubmed_query#Misc
* Finally, I’ve done little write up of some highlights, viz:
http://files.gersteinlab.org/public-docs/2018/01.22/GersteinLab-Research-Highlights-in-2017.pdf